cd
ls
command
>
>>
<
|
;
&
(commands)
{ commands; }
if
then
else
basename
dirname
bash
-F
$
NF
print
OFS
BEGIN
awk
-v
sftp
rmate
tmux
vim
trim_stupendous
bwa
bwa mem
samtools
.genotypes
samtools stats
This is going to be a pretty light coverage of how it works. Maybe I could get Rachael Bay or CH to write it.