Run the mendel binary in directory Dir using control file Control — run_mendel • CKMRsim

Run the mendel binary in directory Dir using control file Control

run_mendel(
  Dir,
  Control,
  discard_stderr = getOption("CKMRsim.discard_stderr", default = FALSE),
  discard_stdout = getOption("CKMRsim.discard_stdout", default = FALSE)
)

Arguments

Dir: the directory in which to run mendel
Control: the "control file" with which to run mendel. If not an absolute path it should be given relative to the Dir directory.
discard_stderr: If TRUE, stderr is discarded Otherwise, it gets written to the R console.
discard_stdout: If TRUE, stdout is discarded. Otherwise, it gets written to the R console.

Examples

if (FALSE) {
# first prepare the input files and define tmpDir
example(write_all_mendel_files)

# then run mendel
run_mendel(tmpDir, "mendel-example-Control.in")
}