pick the genotypes out of the Mendel output pedigree file to use to compute Q

Not sure exactly how I am going to do this, as we need to include genotyping error on there as well. Crap. But at least I have a start on how to parse this monstrous file. This assumes that the focal pair of individuals are labeled 1 and 2.

read_mendel_outped(Input, NumA, verbose)

Arguments

Input

the path to the Mendel output file to read in.

NumA

the number of alleles at each locus

verbose

integer flag. 1 gives verbose output. 0 does not.

Examples

if (FALSE) {
read_mendel_outped("/Users/eriq/Desktop/mendel-example-Ped.out")
}