plot_amm_from_matrix.Rd
For illustration purposes, if you want to simply plot an ancestry matrix (or several) to show particular values, then this is the handy function for you.
plot_amm_from_matrix(X)
input tibble with a factor or character column ID
that gives
the "name" of the ancestry matrix that will be used if you want to facet
over the values in ID
. And also X
must have a list column anc_match_matrix
each
element of which is a logical ancestry match matrix. X
may have a list column
of tibbles called psa_tibs
that says which cells are the primary shared ancestors.
plot_amm_from_matrix()
returns a ggplot object: each facet is an image of the
ancestry match matrix. It is facet-wrapped over the values in the ID column of X
.
# get some input: all the 2-generation AMMs in `example_amms`
X <- example_amms[stringr::str_detect(names(example_amms), "2gen$")] %>%
tibble::enframe(name = "ID", value = "anc_match_matrix")
# plot those
g <- plot_amm_from_matrix(X) +
ggplot2::facet_wrap(~ ID)