This data set contains the metadata for the 100 most divergent SNP loci for three feral swine populations sampled in the United States. To make the dataset more computationally efficient, only 3 chromosomes were used (12,17, and 18). The metadata for the SNP loci is in a tibble with three columns: chrom (character), pos (numeric), variant_id (character). The column 'chrom' contains the chromosome ID where the SNP is located, the column 'pos' gives the base pair location on the chromosome, and the column 'variant_id' gives the name of the SNP. Each row of the metadata tibble contains the metadata for a given SNP locus. The individual genotypes for each of these SNP loci can be found in Geno.

Format

A tibble with three columns: chrom, pos, and variant_id.

Source

Chromosome, position, and variant IDs are from the Sus scrofa 10.2 genome https://www.ncbi.nlm.nih.gov/assembly/GCF_000003025.5/.